Proj S03 – Biobot – Medical Image Annotation & Adjustable Prostate Phantom

AI Medical Image Segmentation Tool & Adjustable Prostate Phantom

Redefining Surgical Realism by Closing the Loop on Surgical Accuracy.

Introducing Proj S03 – Biobot – Medical Image Annotation & Adjustable Prostate Phantom

This project has two components: an AI-powered Annotation Tool for automating medical imaging segmentation of the prostate and surrounding organs, and an Adjustable Prostate Phantom. The Phantom simulates realistic prostate physiology for ultrasound calibration and medical research. The AI segmentation tool is validated, tested, and optimized using the Phantom to improve prostate biopsy accuracy

Team members

Jun Jin (ISTD), How Son Yun Julian (EPD), Sengdalavong Palinya (ISTD), Gan Jessica Loraine Ngo (ESD), Phua Jia Jing Elliot (ISTD), Chua Kevin Subong (EPD), Helidorus Keegan Dave Mariono (EPD)

Instructors:

  • Du Yihan

Writing Instructors:

  • Belinda Seet

Image: Biobot’s Mona Lisa 2.0; Image referenced from https://biobotsurgical.com

Industry Partner

BIOBOT SURGICAL

Biobot Surgical is a Singapore-based medical technology company that specializes in robotic-assisted systems for the precise diagnosis and treatment of prostate cancer.

Its flagship platform, the iSR'obotâ„¢ Mona Lisa, utilizes advanced MRI-ultrasound fusion and robotic needle guidance to perform transperineal biopsies with sub-millimeter accuracy. This minimally invasive approach significantly reduces infection risks compared to traditional methods while improving the detection of clinically significant cancers in challenging areas of the prostate.

Current Procedure

Pain Points

The Clinical Bottleneck

Manual annotation takes hours of expert time, and is subjective to the annotator who might have a different level of expertise.

Anatomical Oversight

Existing datasets and tools focus almost exclusively on the prostate, leaving a critical lack of annotations for surrounding “Organs-at-Risk” (OARs) such as the bladder, seminal vesicles (SV), and rectum.

The Realism Gap

Because current phantoms cannot be modified, they cannot simulate complex intra-operative scenarios, leaving the biopsy system unproven against diverse anatomies.

Problem Statement

How might we 

 automate and streamline the segmentation  of the prostate and surrounding organs, 

and validate it through  calibration & testing on a modifiable prostate phantom , 

to  improve the accuracy and efficacy of the Mona Lisa prostate biopsy procedure?

Proposed Solution

This project has two components: an AI-powered Annotation Tool for automating medical imaging segmentation of the prostate and surrounding organs, and an Adjustable Prostate Phantom. The Phantom simulates realistic prostate physiology for ultrasound calibration and medical research. The AI segmentation tool is validated, tested, and optimized using the Phantom to improve prostate biopsy accuracy.

AI MRI Segmentation

Using open-sourced MRI datasets, we consulted with industry experts to annotated the features in the data.

Then, we finetuned four different segmentation models (MedSAM3, YOLO-11N, ViT and ResNet).

We benchmarked the models against each other and compared the DICE similarity score of each model for each class. The best model is then integrated into a full-stack application with a clean interface and a 3D model viewer for medical practitioners to view the segmented MRI images in 3D. 

AI Model Training Pipeline

ProSeg Application Demo

Adjustable Prostate Phantom

In its fully assembled form, the phantom presents a front-panel interface with three directional control dials which can be adjusted manually or automatically through electronic system.

These allow real-time adjustment of the internal prostate position without disassembling the unit, keeping workflow efficient during training sessions and multi-user environments.

Mechanism

Embedded Structure

This configuration is what enables controlled, multi-directional prostate repositioning.

This allows clinicians to simulate lateral and posterior organ position variations to reflect real patient conditions.

Detachable Protective Case

The rear-facing casing serves as a protective housing for the internal adjustment mechanism.

Designed to be detachable, it can be easily removed to access to the internal components is required.

Modular Electronic Controls

1. Gear Coupler

The gears will slot into the interface so that it can be turned by the stepper motors. A taut pulley system controls the left, right & backwards movement of the prostate within the phantom.

2. Two-Phase Stepper Motor​

The stepper motors will move in-sync to control 2-axes of movement.

3. Microcontroller, Driver & Buttons

The user can control the turning direction through buttons connected to a microcontroller that controls the motors.

Spring Iteration

The gear component was iteratively refined to improve adjustment precision, contact stability, and force transmission within the phantom mechanism. Variations in gear profile and surface geometry were explored to achieve smoother motion and more controlled phantom reconfiguration.

The PROSTA-TEAM

Julian How

Engineering Product & Design

(Mech Eng)

Keegan Mariono

Engineering Product & Design

(Mech Eng)

Kevin Chua

Engineering Product & Design

(Com Eng)

Jin Jun

Computer Science & Design

(SWE + AI)

Jessica Gan

Engineering System & Design

(Data Sci + AI)

Elliot Phua

Computer Science & Design

(SWE + AI)

Palinya Sengdalavong

Computer Science & Design

(SWE + AI)

In partnership with :

Supported by :

Acknowledgements

The capstone team would like to express our utmost gratitude to everyone who has supported this project thus far. Special thanks to Biobot Surgical for the opportunity to collaborate on an impactful and meaningful project, and to our mentors, Dr. James Zhou and Dr. Derrick Yong, for their unwavering support and guidance. We would also like to acknowledge our capstone mentors, Dr. Du Yihan, Dr. Fernando Dileepa, and Ms. Belinda Seet, for their mentorship and sharing their expertise. We would also like to thank Dr. Michinao Hashimoto for accommodating us in his lab.

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